Predicting how stream fishes may respond to habitat restoration efforts is difficult, in part because of an incomplete understanding of how basic biological parameters such as growth and ontogenetic habitat shifts interact with flow regime and riverscape ecology. We assessed age-specific Guadalupe Bass Micropterus treculii habitat associations at three different spatial scales in the South Llano River, a spring-fed stream on the Edwards Plateau of central Texas, and the influence of habitat and flow regime on growth. We classified substrates using a low-cost side-scan sonar system. We used scale microstructure to determine age and to back-calculate size at age. Over 65% of captured Guadalupe Bass were age 2 or age 3, but individuals ranged from 0 to 7 y of age. Habitat associations overlapped considerably among age classes 1–3+, but age-0 Guadalupe Bass tended to associate with greater proportions of pool and run mesohabitats with submerged aquatic vegetation. Although habitat metrics across multiple scales did not have a large effect on growth, river discharge was negatively correlated with growth rates. Understanding age-specific Guadalupe Bass habitat associations at multiple scales will increase the effectiveness of restoration efforts directed at the species by assisting in determining appropriate ecological requirements of each life-history stage and spatial scales for conservation actions.

Alteration of flow regimes by anthropogenic activities is one of the primary environmental problems in riverine systems. Understanding how hydrologic conditions can affect ontogenetic habitat shifts of imperiled fishes is important in order to develop conservation and management strategies for each life-history stage. We examined relationships between the abundance of young-of-the-year (YOY) Rio Grande Blue Sucker and various abiotic variables in the Trans-Pecos region of the Rio Grande in Texas, USA. We used open N-mixture modeling to better understand the factors affecting ontogenetic habitat shifts of the imperiled aridland river fish. In addition, we examined differences in Rio Grande Blue Sucker total length among three mesohabitat types (pool, riffle, and run). The results of open N-mixture modeling suggested that as pool area increased, the abundance of YOY Rio Grande Blue Sucker increased. Total length of YOY Rio Grande Blue Sucker also significantly differed among the three mesohabitat types. The total lengths of YOY Rio Grande Blue Sucker in pool habitats were lower than in other mesohabitats, suggesting that YOY Rio Grande Blue Sucker undergo ontogenetic habitat shifts into greater current velocity habitats as they grow. The habitat associations we documented support the growing body of research emphasizing the importance of maintaining sufficient and appropriately timed flows to avoid prolonged low flows that limit habitat availability for native fish species during sensitive life stages in the Rio Grande and other aridland rivers.

Burbot (Lota lota: Gadidae) is a difficult species to manage effectively due to its preference for deep‐water habitats and under‐ice spawning behaviour, resulting in a poor understanding of its reproductive activity. However, the use of acoustic signalling by burbot as part of their mating system has recently been described and this behaviour may provide a means of investigating questions regarding the spatial and temporal distribution of spawning aggregations using passive acoustic monitoring. We used audio and video recording to confirm that burbot vocalise and that these vocalisations can be detected under field conditions as well as to characterise the relationship between burbot acoustic signalling and spawning behaviour. We also evaluated the feasibility of locating and monitoring burbot spawning aggregations in real time using passive acoustics. Burbot vocalisations were difficult to identify with only about 6% of the recordings containing calls being successfully identified as such in the field. Burbot vocalised more often between sundown and sunrise than during daylight hours. Calls recorded at night tended to be lower frequency, longer duration, and have lower bandwidth than those made during the day. Burbot vocalisations could not be recorded in conjunction with video recordings of spawning activity, indicating that burbot may not call during active spawning, but may use acoustic communication to signal the onset of reproductive readiness and to form pre‐spawning aggregations. While burbot calls were readily identifiable, observers had a difficult time identifying burbot calls in real time under field conditions. Passive acoustic monitoring demonstrates considerable potential as a management tool to locate burbot spawning grounds and identify periods of activity, but may not be an appropriate technique for monitoring spawning activity in real time.

Understanding the degree of intraspecific variation within and among populations is a key aspect of predicting the capacity of a species to respond to anthropogenic disturbances. However, intraspecific variation is usually assessed at either limited temporal, but broad spatial scales or vice versa, which can make assessing changes in response to long‐term disturbances challenging. We evaluated the relationship between the longitudinal gradient of changing flow regimes and land use/land cover patterns since 1980 and morphological variation of Guadalupe Bass Micropterus treculii throughout the Colorado River Basin of central Texas. The Colorado River Basin in Texas has experienced major alterations to the hydrologic regime due to changing land‐ and water‐use patterns. Historical collections of Guadalupe Bass prior to rapid human‐induced change present the unique opportunity to study the response of populations to varying environmental conditions through space and time. Morphological differentiation of Guadalupe Bass associated with temporal changes in flow regimes and land use/land cover patterns suggests that they are exhibiting intraspecific trait variability, with contemporary individuals showing increased body depth, in response to environmental alteration through time (specifically related to an increase in herbaceous land cover, maximum flows, and the number of low pulses and high pulses). Additionally, individuals from tributaries with increased hydrologic alteration associated with urbanization or agricultural withdrawals tended to have a greater distance between the anal and caudal fin. These results reveal trait variation that may help to buffer populations under conditions of increased urbanization and sprawl, human population growth, and climate risk, all of which impose novel selective pressures, especially on endemic species like Guadalupe Bass. Our results contribute an understanding of the adaptability and capacity of an endemic population to respond to expected future changes based on demographic or climatic projection.

Maintaining intraspecific diversity is an important goal for fisheries conservation and recovery actions. While ecomorphological studies have demonstrated intraspecific diversity related to feeding or flow regime, there has been little assessment of such variation in regards to spawning habitat. We evaluated the relationship between individual morphology of Robust Redhorse and Notchlip Redhorse and variables describing the spawning habitat from which they were captured, such as current velocity, slope, and substrate particle size. Robust Redhorse (n = 58) and Notchlip Redhorse (n = 43) were captured from spawning aggregations in the lower Savannah River, South Carolina-Georgia using prepositioned grid electrofishers. They were then measured and photographed before being released. We constructed a truss network using digitized landmarks on each of the photographs. Relationships between the morphological and environmental datasets were assessed using canonical correlation analysis. In both species, these morphological predictors were correlated primarily to depth, though current velocity also contributed to the environmental canonical score for Robust Redhorse. Robust Redhorse captured from the deeper locations with higher current velocities had heads with lower aspect ratio compared to individuals captured from shallower areas. Notchlip Redhorse from shallower areas were deeper-bodied and had shorter trunks than counterparts from deeper areas. These differences suggest that ensuring spawning habitat heterogeneity may be an important component to conserving intraspecific diversity, particularly in systems where such habitat is limiting.

Developing effective monitoring methods for elusive, rare, or patchily distributed species requires extra considerations, such as imperfect detection. Although detection is frequently modeled, the opportunity to assess it empirically is rare, particularly for imperiled species. As part of an assessment of survey methodologies for Pecos assiminea (Assiminea pecos), an endangered semi-aquatic snail inhabiting the riparian zones of springs and sinkholes, we conducted an assessment of the detection and accuracy of quadrat searches. Quadrats (9 x 20 cm metal frame; n = 12) were placed along spring banks in suitable Pecos assiminea habitat and a randomly assigned to a treatment level, defined as the number of empty snail shells (n = 0, 3, 6, or 9) placed in the quadrat. Ten observers rotated through each quadrat, conducting 5-minute visual searches for snail shells. The probability of detecting a snail shell when present was 72.2%, but decreased with increasing litter depth and lower numbers of shells present. The mean (± SE) observer accuracy was 43.6 ± 17.1%. Observer accuracy was positively correlated to the number of snail shells in the quadrat and negatively correlated to the number of times a quadrat was searched and the number of quadrats an observer searched prior to a given observation. Our results indicate that surveys for Pecos assiminea underrepresent true abundance, but likely accurately determine presence or absence. Understanding the detection probability of numerous behaviorally or environmentally elusive, small, rare, threatened and/or endangered species improves density estimates and aids in conservation efforts.

Evaluating the precision of age estimates generated by different readers and different calcified structures is an important part of generating reliable estimations of growth, recruitment, and mortality for fish populations. Understanding the potential loss of precision associated with using structures harvested without sacrificing individuals, such as scales or fin rays, is particularly important when working with imperiled species, such as Blue Sucker Cycleptus elongatus. We collected otoliths (lapilli), scales, and the first fin rays of the dorsal, anal, pelvic, and pectoral fins of nine Blue Sucker. Age estimates were generated from each structure by both experienced (n=5) and novice (n=4) readers. We found that independent of the structure used to generate the age estimates, the mean coefficient of variation (CV) of experienced readers was approximately 29% lower than that of novice readers. Further, the mean CV of age estimates generated from pectoral fin rays, pelvic fin rays, and scales were statistically indistinguishable and less than those of dorsal fin rays, anal fin rays, and otoliths. Anal, dorsal, and pelvic fin rays and scales underestimated age compared to otoliths, but age estimates from pectoral fin rays were comparable to those from otoliths. Skill level, structure, and fish total length were factors influencing reader precision between subsequent reads of the same aging structure from a particular fish. Using structures that can be harvested non-lethally to estimate the age of Blue Sucker can provide reliable and reproducible results, similar to those that would be expected from using of otoliths. Therefore, we recommend the use of pectoral fin rays as a non-lethal method to obtain age estimates for Blue Suckers.

Decreases in the abundance and diversity of stream fishes in the North American Great Plains have been attributed to habitat fragmentation, altered hydrological and temperature regimes, and elevated levels of total dissolved solids and total suspended solids. Pelagic-broadcast spawning cyprinids, such as the Arkansas River Shiner Notropis girardi, may be particularly vulnerable to these changing conditions due to their reproductive strategy. Our objectives were to assess the effects of temperature, total dissolved solids, and total suspended solids on the developmental and survival rates of Arkansas River Shiner larvae. Results suggest temperature had the greatest influence on the developmental rate of Arkansas River Shiner larvae. However, embryos exposed to the higher levels of total dissolved solids and total suspended solids reached developmental stages earlier than counterparts at equivalent temperatures. Although this rapid development may be beneficial in fragmented waters, our data suggest it may be associated with lower survival rates. Furthermore, those embryos incubating at high temperatures, or in high levels of total dissolved solids and total suspended solids resulted in less viable embryos and larvae than those incubating in all other temperature, total dissolved solid, and total suspended solid treatment groups. As the Great Plains ecoregion continues to change, these results may assist in understanding reasons for past extirpations and future extirpation threats as well as predict stream reaches capable of sustaining Arkansas River Shiners and other species with similar early life-history strategies.

This study examined the effects thyroid-active compounds during early development on body morphology of Zebrafish (Danio rerio). Three-day postfertilization (dpf) larvae were exposed to goitrogen [methimazole (MZ, 0.15 mM)], combination of MZ (0.15 mM) and thyroxine (T4, 2 nM), T4 (2 nM), or control (reconstituted water) treatments until 33 dpf and subsequently maintained in reconstituted water until 45 dpf. Samples were taken at 33 and 45 dpf for multivariate analysis of geometric distances between selected homologous landmarks placed on digital images of fish, and for histological assessment of thyrocytes. Body mass, standard length, and pectoral fin length were separately measured on remaining fish at 45 dpf. Histological analysis confirmed the hypothyroid effect (increased thyrocyte height) of MZ and rescue effect of T4 co-administration. Geometric distance analysis showed that pectoral and pelvic fins shifted backward along the rostrocaudal axis under hypothyroid conditions at 45 dpf and that T4 co-treatment prevented this shift. Pectoral fin length at 45 dpf was reduced by exposure to MZ and rescued by co-administration of T4, but it was not associated with standard length. Methimazole caused a reduction in body mass and length at 45 dpf that could not be rescued by T4 co-administration, and non-thyroidal effects of MZ on body shape were also recognized at 33 and 45 dpf. Alterations in the length and position of paired fins caused by exposure to thyroid-disrupting chemicals during early development, as shown here for Zebrafish, could affect physical aspects of locomotion and consequently other important organismal functions such as foraging, predator avoidance, and ultimately survival and recruitment into the adult population. Results of this study also suggest the need to include rescue treatments in endocrine disruption studies that rely on goitrogens as reference for thyroid-mediated effects.

Habitat heterogeneity at multiple scales is a major factor affecting fish assemblage structure. However, assessments that examine these relationships at multiple scales concurrently are lacking. The lack of assessments at these scales is a critical gap in understanding as conservation and restoration efforts typically work at these levels. A combination of low-cost side-scan sonar surveys, aerial imagery using an unmanned aerial vehicle, and fish collections were used to evaluate the relationship between physicochemical and landscape variables at various spatial scales (e.g. micro-mesohabitat, mesohabitat, channel unit, stream reach) and stream–fish assemblage structure and habitat associations in the South Llano River, a spring-fed second-order stream on the Edwards Plateau in central Texas during 2012–2013. Low-cost side-scan sonar surveys have not typically been used to generate data for riverscape assessments of assemblage structure, thus the secondary objective was to assess the efficacy of this approach. The finest spatial scale (micro-mesohabitat) and the intermediate scale (channel unit) had the greatest explanatory power for variation in fish assemblage structure. Many of the fish endemic to the Edwards Plateau showed similar associations with physicochemical and landscape variables suggesting that conservation and restoration actions targeting a single endemic species may provide benefits to a large proportion of the endemic species in this system. Low-cost side-scan sonar proved to be a cost-effective means of acquiring information on the habitat availability of the entire river length and allowed the assessment of how a full suite of riverscape-level variables influenced local fish assemblage structure.

Accessing and effectively sampling the off-channel habitats that are considered crucial for early life stages of freshwater fishes constitute a difficult challenge when common ichthyoplankton survey methods, such as push nets, are used. We describe a new method of deploying push nets from jet-propelled kayaks to enable the sampling of previously inaccessible off-channel habitats. The described rig is also functional in more open and accessible habitats, such as the main channel of rivers or reservoirs. Although further evaluation is necessary to ensure that results are comparable across studies, the described push-net system offers a statistically rigorous methodology that generates replicate samples from a wide range of freshwater habitats that were previously inaccessible to this gear type.

Low-cost unmanned aerial systems (UAS) have recently gained increasing attention in natural resources management due to their versatility and demonstrated utility in collection of high-resolution, temporally-specific geospatial data. This study applied low-cost UAS to support the geospatial data needs of aquatic resources management projects in four Texas rivers. Specifically, a UAS was used to (1) map invasive salt cedar (multiple species in the genus Tamarix) that have degraded instream habitat conditions in the Pease River, (2) map instream meso-habitats and structural habitat features (e.g., boulders, woody debris) in the South Llano River as a baseline prior to watershed-scale habitat improvements, (3) map enduring pools in the Blanco River during drought conditions to guide smallmouth bass removal efforts, and (4) quantify river use by anglers in the Guadalupe River. These four case studies represent an initial step toward assessing the full range of UAS applications in aquatic resources management, including their ability to offer potential cost savings, time efficiencies, and higher quality data over traditional survey methods.

Understanding the environmental processes determining the timing and success of reproduction is of critical importance to developing effective management strategies of marine fishes. Unfortunately it has proven difficult to comprehensively study the reproductive behavior of broadcast-spawning fishes. The use of electronic data storage tags (DSTs) has the potential to provide insights into the behavior of fishes. These tags allow for data collection over relatively large spatial and temporal scales that can be correlated to predicted environmental conditions and ultimately be used to refine predictions of year class strength. In this paper we present data retrieved from DSTs demonstrating that events putatively identified as Atlantic Cod spawning behavior is tied to a lunar cycle with a pronounced semi-lunar cycle within it. Peak activity occurs around the full and new moon with no evidence of relationship with day/night cycles.

Common Snook Centropomus undecimalis were once abundant off the Texas coast, but these populations are now characterized by low abundance and erratic recruitment. Most research concerning Common Snook in North America has been conducted in Florida and very little is known about the specific biology and habitat needs of Common Snook in Texas. The primary objective of this study was to describe the habitat use patterns of juvenile Common Snook and their role in the fish assemblage in the lower portion of the Rio Grande, Texas. Secondarily, we documented the relationship between age and juvenile reproductive development. Fish were collected during January–March 2006 from the lower 51.5 km of the Rio Grande using a bottom trawl and boat-mounted electrofisher. Measurements of water quality and other habitat traits were recorded at each sampling site. We captured 225 Common Snook exclusively in freshwater habitats above river kilometer 12.9. The distribution of juvenile Common Snook was not random, but influenced primarily by turbidity and dissolved oxygen. Sex differentiation and gonadal development based on histological examination of gonads established that age-1 and age-2 Common Snook were juvenile, prepubertal males. There was no difference between the age groups in their overall distribution in the river. However, age-2 Common Snook were associated with deeper areas with faster currents, higher conductivity, and steeper banks. Overall, Common Snook in the lower Rio Grande show substantial differences in habitat use than their counterparts in other parts of the range of the species, but it is unclear whether this is due to differences in habitat availability, behavioral plasticity, or some combination thereof.

Electronic data storage tags (DSTs) were implanted into Atlantic Cod captured in Icelandic waters from 2002 to 2007 and the depth profiles recovered from these tags (females: n = 31, males: n = 27) were used to identify patterns consistent with published descriptions of cod courtship and spawning behavior. The individual periods of time that males spent exhibiting behavior consistent with being present in a spawning aggregation—i.e. periods consisting of a clear tidal signature in the DST depth profile associated with an individual remaining on or near the substrate—were longer than those of females. Over the course of a spawning season, male cod spent approximately twice the amount of time in spawning aggregations than females, but female cod visited more aggregations per unit time. On average, males participated in approximately 57% more putative spawning events, i.e. vertical ascents potentially corresponding to gamete release, than did females. However, males <85 cm total length participated in the same number of putative spawning events as females of comparable size. In both sexes, larger individuals and/or individuals that spent a longer period of time within an aggregation participated in a larger number of putative spawning events. Although further validation and refinement is necessary, particularly in the identification of spawning events, the ability offered by DSTs to quantify cod spawning behavior may aid in the development of management and conservation plans.

Habitat fragmentation and flow regulation are significant factors related to the decline and extinction of freshwater biota. Pelagic-broadcast spawning cyprinids require moving water and some length of unfragmented stream to complete their life cycle. However, it is unknown how discharge and habitat features interact at multiple spatial scales to alter the transport of semi-buoyant fish eggs. Our objective was to assess the relationship between downstream drift of semi-buoyant egg surrogates (gellan beads) and discharge and habitat complexity. We quantified transport time of a known quantity of beads using 2–3 sampling devices at each of seven locations on the North Canadian and Canadian rivers. Transport time was assessed based on median capture time (time at which 50% of beads were captured) and sampling period (time period when 2.5% and 97.5% of beads were captured). Habitat complexity was assessed by calculating width∶depth ratios at each site, and several habitat metrics determined using analyses of aerial photographs. Median time of egg capture was negatively correlated to site discharge. The temporal extent of the sampling period at each site was negatively correlated to both site discharge and habitat-patch dispersion. Our results highlight the role of discharge in driving transport times, but also indicate that higher dispersion of habitat patches relates to increased retention of beads within the river. These results could be used to target restoration activities or prioritize water use to create and maintain habitat complexity within large, fragmented river systems.

Conservation efforts for threatened or endangered species are challenging because the multi-scale factors that relate to their decline or inhibit their recovery are often unknown. To further exacerbate matters, the perceptions associated with the mechanisms of species decline are often viewed myopically rather than across the entire species range. We used over 80 years of fish presence data collected from the Great Plains and associated ecoregions of the United States, to investigate the relative influence of changing environmental factors on the historic and current truncated distributions of the Arkansas River Shiner Notropis girardi. Arkansas River shiner represent a threatened reproductive ecotype considered especially well adapted to the harsh environmental extremes of the Great Plains. Historic (n = 163 records) and current (n = 47 records) species distribution models were constructed using a vector-based approach in MaxEnt by splitting the available data at a time when Arkansas River Shiner dramatically declined. Discharge and stream order were significant predictors in both models; however, the shape of the relationship between the predictors and species presence varied between time periods. Drift distance (river fragment length available for ichthyoplankton downstream drift before meeting a barrier) was a more important predictor in the current model and indicated river segments 375–780 km had the highest probability of species presence. Performance for the historic and current models was high (area under the curve; AUC > 0.95); however, forecasting and backcasting to alternative time periods suggested less predictive power. Our results identify fragments that could be considered refuges for endemic plains fish species and we highlight significant environmental factors (e.g., discharge) that could be manipulated to aid recovery.

Pelagic broadcast spawning cyprinids are common to Great Plains rivers and streams. This reproductive guild produces non-adhesive semi-buoyant eggs that require sufficient current velocity to remain in suspension during development. Although studies have shown that there may be a minimum velocity needed to keep the eggs in suspension, this velocity has not been estimated directly nor has the influence on egg buoyancy caused by physicochemical factors been determined. We developed a simple, inexpensive flow chamber that allowed for evaluation of minimum current velocity needed to keep semi-buoyant eggs in suspension at any time frame during egg development. The device described here has the capability of testing the minimum current velocity needed to keep semi-buoyant eggs in suspension at a wide range of physicochemical conditions. We used gellan beads soaked in freshwater for 0, 24, and 48 hrs as egg surrogates and evaluated minimum current velocities necessary to keep them in suspension at different combinations of temperature (20.0±1.0°C, 25.0±1.0°C, and 28.0±1.0°C) and total dissolved solids (TDS; 1,000±300 mg L^-1, 3,000±300 mg L^-1, and 6,000±300 mg L^-1). We found that our methodology generated consistent, repeatable results within treatment groups. Current velocities ranging from 0.001-0.026 needed to keep the gellan beads in suspension were negatively correlated to soak times and TDS and positively correlated with temperature. The flow chamber seems to be a viable approach for evaluating minimum current velocities needed to keep the eggs of pelagic broadcast spawning cyprinids in suspension during development.

Stratification restricts habitable areas forcing fish to balance between favourable temperature and minimum dissolved oxygen requirements. Acoustic surveys conducted during the stratified and isothermal periods on tropical Lake Victoria indicated that stratification of temperature and dissolved oxygen (DO) affected vertical distribution of Nile Perch. There was higher mean temperature (25.6 ± 0.5 °C) and lower DO (6.4 ± 1.8 mg/l) during stratified period compared to the isothermal period (mean temperature 24.9 ± 0.3 °C; mean DO 7.3 ± 0.6 mg/l). Higher mean densities of Nile perch were recorded in the coastal (0.44 ± 0.03) and deep (0.27 ± 0.02 g/m³) strata during the stratified compared to the isothermal season (coastal: 0.24 ± 0.01; deep: 0.12 ± 0.02 g/m³). In addition, Nile perch density in the upper 0–40 m depth layers in the coastal and deep strata increased by over 50% from the isothermal to the stratified season. Daily landings from 65 motorised fishing boats between October 2008 and September 2010 show higher mean catch (26.29 ± 0.17 kg/boat/day) during stratified compared to the isothermal (23.59 ± 0.15) season. Thermal stratification apparently compresses the habitat available to Nile Perch and can potentially result in higher exploitation. Managers should evaluate the potential benefits of instituting closed seasons during the stratified period, and stock assessment models should take into account the seasonal niche compression.

Quantitative studies focusing on the collection of semibuoyant fish eggs, which are associated with a pelagic broadcast-spawning reproductive strategy, are often conducted to evaluate reproductive success. Many of the fishes in this reproductive guild have suffered significant reductions in range and abundance. However, the efficiency of the sampling gear used to evaluate reproduction is often unknown and renders interpretation of the data from these studies difficult. Our objective was to assess the efficiency of a modified Moore egg collector (MEC) using field and laboratory trials. Gear efficiency was assessed by releasing a known quantity of gellan beads with a specific gravity similar to that of eggs from representatives of this reproductive guild (e.g., the Arkansas River Shiner Notropis girardi) into an outdoor flume and recording recaptures. We also used field trials to determine how discharge and release location influenced gear efficiency given current methodological approaches. The flume trials indicated that gear efficiency ranged between 0.0% and 9.5% (n = 57) in a simple 1.83-m-wide channel and was positively related to discharge. Efficiency in the field trials was lower, ranging between 0.0% and 3.6%, and was negatively related to bead release distance from the MEC and discharge. The flume trials indicated that the gellan beads were not distributed uniformly across the channel, although aggregation was reduced at higher discharges. This clustering of passively drifting particles should be considered when selecting placement sites for an MEC; further, the use of multiple devices may be warranted in channels with multiple areas of concentrated flow.

The physical habitat used during spawning may potentially be an important factor affecting reproductive output of broadcast spawning marine fishes, particularly for species with complex, substrate-oriented mating systems and behaviors, such as Atlantic Cod Gadus morhua. We characterized the habitat use and behavior of spawning Atlantic Cod at two locations off the coast of southwestern Iceland during a 2-d research cruise (15–16 April 2009). We simultaneously operated two different active hydroacoustic gear types, a split beam echosounder and a dual frequency imaging sonar (DIDSON), as well as a remotely operated underwater vehicle (ROV). A total of five fish species were identified through ROV surveys: including Cusk Brosme brosme, Atlantic Cod, Haddock Melanogrammus aeglefinus, Lemon Sole Microstomus kitt, and Atlantic redfish Sebastes spp. Of the three habitats identified in the acoustic surveys, the transitional habitat between boulder/lava field and sand habitats was characterized by greater fish density and acoustic target strength compared to that of sand or boulder/lava field habitats independently. Atlantic Cod were observed behaving in a manner consistent with published descriptions of spawning. Individuals were observed ascending 1–5 m into the water column from the bottom at an average vertical swimming speed of 0.20–0.25 m s⁻¹ and maintained an average spacing of 1.0–1.4 m between individuals. Our results suggest that cod do not choose spawning locations indiscriminately despite the fact that it is a broadcast spawning fish with planktonic eggs that are released well above the seafloor.

Riverine catostomids can show a wide range of interspecific variation in life-history characteristics. Understanding these differences is an important consideration in evaluating the sensitivity of these fishes to disturbance and in formulating effective conservation strategies, particularly when dealing with an assemblage consisting of multiple species within a watershed. We collected Apalachicola Redhorse Moxostoma n. sp. cf. poecilurum (n  =  125), Spotted Sucker Minytrema melanops (n  =  94), and Quillback Carpiodes cyprinus (n  =  94) to determine age, growth, and reproductive biology of spawning catostomids in the Apalachicola River, Florida, during 2007. Quillback was the smallest in total length at age; longest-lived; most fecund; and produced the smallest eggs. Apalachicola Redhorse was the largest in body size; had an intermediate life span; and produced the fewest yet largest eggs. Spotted Sucker was more similar to Apalachicola Redhorse in most characteristics. Growth during ages 1–3 in all three species seemed to be negatively related to the proportion of observations of extreme flow, both high (Q₉₀) and low (Q₁₀), per year and a positive response in growth rate to high flows (>Q₇₅ but < Q₉₀). However, Apalachicola Redhorse and Spotted Sucker growth was more sensitive to flow conditions than that of Quillback. Our results suggest the life histories and ecological response of Apalachicola River catostomids to flow regulation are important components for developing strategies that incorporate the needs of these fishery resources into an ecosystem-based management approach.

This study investigated the development of a quantitative method for distinguishing stock components of Icelandic cod Gadus morhua based on visual examination of morphology. The stock is known to be structured into genetically distinct geographic components (north and south of Iceland) and behavioural types that spawn sympatrically. Differences in morphology were tested between locations, genotypes (a proxy for behaviour) and sexes. Results show morphological markers on the head, fins and body of G. morhua that are correlated with the sex, genotype of the fish at the pantophysin (pan-I) locus and the location at which the fish were caught. Females were found to have relatively deep bodies, and the pan-I^BB genotype (associated with deep-water feeding behaviour) have greater gaps between their fins. Overall, morphology is more useful for distinguishing sympatric genotypes but less powerful at identifying genetically distinct geographic sub-populations, perhaps because counter-gradient evolution reduces phenotypic differences even with an underlying genetic cause.

Spatial distribution is increasingly studied using individual based telemetric methods in lieu of, or supplementing, surveys. Distributions may be in two- or three-dimensions, or in an abstract space such as depth-temperature space. One of the most basic questions one might address when analyzing these data is whether the distributions of two species, populations, genders, age classes, or other units are different. However due to the inherent differences between survey and telemetric approaches, it is difficult for practitioners to find a simple and easily applied approach to answer this question. In contrast to surveys, telemetry collects a large amount of data about a small number of individuals. Methods must therefore account for the random effects of individual variation in a way not otherwise necessary. We will demonstrate, for example, that tests suitable for detecting differences in distributions from survey data can give false positives (type I errors) when faced with telemetry data. This is essentially because the test treats the large number of data points as a very high n, but in fact the small number of individuals makes the n very small. As a solution, we present a test for differences in distribution based on an existing test for survey data based upon randomizing the data at the level of individuals rather than observations.

There is increasing recognition of intraspecific diversity and population structure within marine fish species, yet there is little direct evidence of the isolating mechanisms that maintain it or documentation of its ecological extent. We analyzed depth and temperature histories collected by electronic data storage tags retrieved from 104 Atlantic Cod at liberty ≥1 year to evaluate a possible isolating mechanisms maintaining population structure within the Icelandic cod stock. This stock consists of two distinct behavioral types, resident coastal cod and migratory frontal cod, each occurring within two geographically distinct populations. Despite being captured together on the same spawning grounds, we show the behavioral types seem reproductively isolated by fine-scale differences in spawning habitat selection, primarily depth. Additionally, the different groups occupied distinct seasonal thermal and bathymetric niches that generally demonstrated low levels of overlap throughout the year. Our results indicate that isolating mechanisms, such as differential habitat selection during spawning, might contribute to maintaining diversity and fine-scale population structure in broadcast-spawning marine fishes.

We document the discovery of Highfin Carpsucker in the Apalachicola River, FL. Three specimens were captured between river kilometer 170–171 on the Apalachicola River in the vicinity of Jim Woodruff Lock and Dam during spring 2007, The specimens were captured within a reach 0.5–1.0 km downstream from the dam and just upstream from a major spawning area for several other catostomids. This is the first record of the species east of the Choctawhatchee River, FL—AL, and is a range extension of 185 km eastward into the Florida Panhandle region of the Northern Gulf of Mexico Coast.

Phenotypic plasticity and local adaptations are important considerations in delineating population structure of marine fishes and critical to their conservation and management. We compared the weight-specific oxygen consumption rates (VO₂/M) of juvenile cod from the northern and southern components of the Icelandic stock acclimated to 4.0°C, 8.5°C, and 12.6°C and their metabolic response to abrupt temperatures changes within this range. Southern individuals exhibited VO₂/M up to 50% higher than their northern counterparts when tested at their acclimation temperature. However, northern fish generally experienced greater changes in VO₂/M, three to six-fold increases, relative to that expected at acclimation when moved to higher temperatures. Southern cod showed a greater decrease in VO₂/M when exposed to lower temperatures. Our results indicate physiological differences exist between the northern and southern components of the Icelandic cod stock and warrant considering them as two distinct populations.

Conservation and management of riverine species, such as the Robust Redhorse Moxostoma robustum, can be hindered by incomplete understanding of their population status. Behavioral responses to sampling methods and susceptibility to capture by a particular gear type have implications for the reliability of population assessments yet are rarely evaluated. Consequently, we used radio-tagged Robust Redhorses in the Ocmulgee River, Georgia, to estimate capture probability when sampled with standard boat electrofishing techniques and to assess behavioral responses of individuals to single and repeated exposures to electrofishing, the recommended sampling method for this species. Transects containing one to eight radio-tagged individuals were sampled. The positions of radio-tagged individuals were recorded before electrofishing and at 1-h, 24-h, and 3–5-d intervals after sampling. We estimated Robust Redhorse abundance and capture probability by treating each transect as analogous to a repeated sample in time. Only one radio-tagged individual and six untagged individuals were captured after 7.46 h of effort. The radio-tagged fish did not exhibit an immediate response to boat electrofishing, but some did move from their original position after electrofishing. Mean movement was 0.15 km after 1 h, 0.19 km after 24 h, and 0.23 km after 3–5 d. However, this movement was similar to that exhibited by fish located at similar intervals during a related telemetry study without exposure to electrofishing. A mean capture probability of 0.031 with a 95% Bayesian credibility interval of 0.002–0.111 was estimated from the best-approximating model. Electrofishing is not a particularly effective method for capturing this species; therefore, inferences about population size and distribution of this or other cryptic species need to account for low detection probabilities associated with electrofishing. Alternative approaches or multiple strategies should be considered when assessing the status of such species.

Robust Redhorse Moxostoma robustum is an imperiled, potadromous fish in the south-eastern USA. Initial recovery efforts have focused on supplementing existing populations and establishing refugial populations through extensive stocking programmes. However, assessment of the success of these programmes has not yet been conducted, and there are few reports evaluating the effectiveness of such programmes with other potadromous species. Radio telemetry was employed to assess the effectiveness of a stocking programme aimed at addressing whether stocked individuals would remain in an area free of introduced predators and ascertaining the ability of stocked fish to integrate into a resident population. Hatchery-reared Robust Redhorse were captured from refugial populations established in other river systems and were transferred to the Ocmulgee River, Georgia where a population of hatchery-reared individuals and an unknown number of wild fish reside. These transferred Robust Redhorse exhibited an exploratory phase for the first 3 months before adopting behaviour patterns, including spawning migrations, that were consistent with those reported for wild fish in other systems. However, some individuals seemed unable to locate suitable spawning habitat. Approximately half of the radio-tagged fish remained within the area free of introduced predators. At least some radio-tagged Robust Redhorse fully integrated into the resident population as evidenced by their presence in spawning aggregations with resident individuals. The effectiveness of a stocking programme is dependent upon the ability of stocked individuals to integrate into an existing population or replicate the behaviour and functionality of a resident population. Evaluations of stocking programmes should incorporate assessments of behaviour in addition to surveys to estimate abundance and survivorship and genetic assessments of augmentation of effective population sizes.

Little is known about the behavior of individual fish in a spawning aggregation, specifically how long an individual remains in an aggregation. We monitored Moxostoma robustum (Cope) (Robust Redhorse) in a Savannah River spawning aggregation during spring 2004 and 2005 to provide an estimate of the total number of adults and the number of males comprising the aggregation and to determine male residence time and movements within a spawning aggregation. Robust Redhorse were captured using prepostioned grid electrofishers, identified to sex, weighed, measured, and implanted with a passive integrated transponder. Spawning aggregation size was estimated using a multiple census mark-and-recapture procedure. The spawning aggregation seemed to consist of approximately the same number of individuals (82–85) and males (50–56) during both years of this study. Individual males were present for a mean of 3.6 ± 0.24 days (± SE) during the 12-day spawning period. The mean distance between successive recaptures of individual males was 15.9 ± 1.29 m (± SE). We conclude that males establish spawning territories on a daily basis and are present within the spawning aggregation for at least 3–4 days. The relatively short duration of the aggregation may be the result of an extremely small population of adults. However, the behavior of individuals has the potential to influence population estimates made while fish are aggregated for spawning.

Differences in the life history strategies employed by otherwise ecologically similar species of a fish assemblage may be an important factor in the coexistence of these species and is an essential consideration in the conservation and management of these assemblages. We collected scales to determine age and growth of four species of the catostomid assemblage (Northern Hogsucker Hypentelium nigricans, Spotted Sucker Minytrema melanops, Notchlip Redhorse Moxostoma collapsum and Robust Redhorse Moxostoma robustum) of the Savannah River, Georgia–South Carolina in spring 2004 and 2005. Robust Redhorse was the largest species; reaching sexual maturity at an older age and growing faster as a juvenile than the other species. Spotted Sucker did not achieve the same size as Robust Redhorse, but reached sexual maturity at younger ages. Notchlip Redhorse was intermediate between the abovementioned two species in age at maturity and size. Northern Hogsucker was the smallest species of the assemblage and reached the sexual maturity at the age of three. Both Robust Redhorse and Spotted Sucker were sexually dimorphic in size-at-age. The range of life history strategies employed by Savannah River catostomids encompasses the range of life history strategies exhibited within the family as a whole.

Shallow-water, lithophilic spawning fishes are among the most vulnerable to anthropogenic fluctuations in water levels. We monitored water levels and environmental conditions at the nest sites of Moxostoma robustum (Robust Redhorse) on a main-channel gravel bar in the Savannah River, GA–SC. During the course of the 2005 spawning season, over 50% of the observed nest sites were either completely dewatered or left in near zero-flow conditions for several days. This occurred on two separate occasions, once early during the spawning season and then again near its conclusion. We hypothesize the habitat preferences of spawning Robust Redhorse leave them vulnerable to water-level fluctuations, and this phenomenon may be widespread in regulated river systems.

Spawning aggregations of five species of catostomids were observed on the two mid-channel gravel bars of the Savannah River, Georgia and South Carolina, in 2004 and 2005 to assess the degree of spatial and temporal overlap in the use of this habitat and determine the habitat preferences leading to segregation. Spawning catostomids showed a considerable amount of temporal overlap in their use of these mid-channel gravel bars. The observed temporal overlap was consistent between 2004 and 2005 and corresponded to temperatures at which species were present. The distribution of catostomids was not uniform at the upstream gravel bar. Carpsuckers Carpiodes sp., Spotted Sucker Minytrema melanops and Robust Redhorse Moxostoma robustum both demonstrated some spatial overlap with Notchlip Redhorse Moxostoma collapsum; however, their overall distributions were different from one another. Northern Hogsucker Hypentelium nigricans was present across the gravel bars, apparently as an egg predator. Spawning catostomids segregated based on flow, depth, slope and substratum size. Whether due to limited habitat availability or changes in the timing of reproduction due to altered cues, temporal and spatial overlap occurs between spawning catostomids despite the apparent partitioning of available spawning habitat. It is unclear, however, if this overlap results in excessive mortality in the early life-history stages of these species. Results suggest spatial overlap among catostomid species was minimized due to species spawning in areas within a narrow range of conditions. Intraspecific interactions such as nest site superimposition or disturbance may be a concern.

The Robust Redhorse Moxostoma robustum is a large riverine catostomid whose distribution is restricted to three Atlantic Slope drainages. Once presumed extinct, this species was rediscovered in 1991. Despite being the focus of conservation and recovery efforts, the Robust Redhorse's movements and habitat use are virtually unknown. We surgically implanted pulse-coded radio transmitters into 17 wild adults (460–690 mm total length) below the downstream-most dam on the Savannah River and into 2 fish above this dam. Individuals were located every 2 weeks from June 2002 to September 2003 and monthly thereafter to May 2005. Additionally, we located 5–10 individuals every 2 h over a 48-h period during each season. Study fish moved at least 24.7 ± 8.4 river kilometers (rkm; mean ± SE) per season. This movement was generally downstream except during spring. Some individuals moved downstream by as much as 195 rkm from their release sites. Seasonal migrations were correlated to seasonal changes in water temperature. Robust Redhorses initiated spring upstream migrations when water temperature reached approximately 12°C. Our diel tracking suggests that Robust Redhorses occupy small reaches of river (∼1.0 rkm) and are mainly active diurnally. Robust Redhorses were consistently found in association with woody debris and gravel streambed sediments along the outer edge of river bends. Fish exhibited a high degree of fidelity to both overwintering and spawning areas. Our observations of long-distance seasonal migrations suggest that successful Robust Redhorse conservation efforts may require an ecosystem management approach.

We assessed fish escapement from two South Carolina reservoirs, Par Pond and L Lake, from spring 2002 through summer 2003. Escapement was greatest in the spring and early summer, with Lake Chubsucker Erimyzon sucetta dominating the escapement catch in early spring and several sunfishes Lepomis spp. dominating in late spring and early summer. Most of the escaping centrarchids were Bluegill L. macrochirus, Warmouth L. gulosus, and Redbreast Sunfish L. auritus, in L Lake and Warmouths, Bluegills, Dollar Sunfish L. marginatus, and Spotted Sunfish L. punctatus in Par Pond. Escapement was enhanced by high reservoir water levels and surface discharge over the spillway. Escapement declined during periods of hypolimnetic release from bottom discharge gates. Location of the Par Pond discharge structure in the littoral zone rather than the pelagic zone as in L Lake contributed to greater escapement of littoral species in Par Pond. Species composition in the escapement catches and reservoirs was not significantly correlated. Relatively low escapement from L Lake and Par Pond compared with that in other reservoirs may have been related to the configuration of the discharge structures, low water levels during 2002, fish habitat preferences, species composition and abundance in the reservoirs, and low rates of discharge.

We investigated the potential of prepositioned grid electrofishers as a means of collecting broodstock for the rare Robust Redhorse Moxostoma robustum. We found that combined with visual observation, this technique allowed for the efficient capture of fish in breeding condition. We were able to harvest eggs in the field and bring only fertilized eggs into the hatchery. There was no need to induce spawning hormonally. Although their use is limited by water depth and clarity, prepositioned grid electrofishers used in conjunction with visual observation warrants further consideration as an effective tool for the collection of reproductively active broodstock for conservation purposes.

Flathead Catfish were introduced to the Altamaha River system, Georgia in the 1970's. We determined the length-weight relationship, Von Bertalanffy growth parameters, and back calculated lengths by examining the sagittal otoliths of 331 individuals captured from this population. We found that there were no sex related differences in length weight relationship or Von Bertalanffy growth parameters. Flathead Catfish in the Altamaha River system grow at about the same rate as individuals in other introduced populations.

Large-format visible implant alphanumeric (VIalpha) tags were implanted into 15,400 Rainbow Trout Oncorhynchus mykiss,/i>. Tag retention after 25 d was 82.6%, and survivorship was 92.8%. The results of this study compare favorably with those of similar studies on other species and suggest that large-format VIalpha tags are an appropriate choice for studies requiring the individual identification of larger Rainbow Trout.

One alternative reproductive tactic involving early-maturing, cryptic males is referred to as “sneaking.” Although sneakers tend to be easily detectable upon close inspection, little is known about the proportion of a fish population consisting of sneakers. We examined 15,400 age-1 Rainbow Trout Oncorhynchus mykiss in a hatchery. Total length (mm), wet weight (g), and sex (sneaker male or unknown) were recorded for each fish. We also individually tagged each sneaker male with soft visual implant alphanumeric (VIalpha) tags that were sequentially numbered and held the fish for 25 d before inspection. Sneakers constituted 2.8% of the hatchery rainbow trout population and were smaller in total length and weight than typical rainbow trout of the same age. Retention of the VIalpha tags in sneakers was 58.9%, significantly lower than has been reported under similar circumstances. We found that sneaker males may contribute substantially to hatchery populations. Reduced tag retention in sneakers may bias studies evaluating the effect of hatchery fish on wild populations. We believe that hatchery-produced sneaker males have the potential to contribute importantly to the genetic composition of wild populations.

The data-limited stock assessment models used to monitor the status of coral reef fish species in the Western Pacific region are dependent upon accurate estimates of standing stock biomass generated from underwater visual surveys of reefs. However, the imperfect detection of and variable occupancy of habitat by reef fishes are not currently accounted for in these estimates. Therefore, the objective of this project was to estimate detection and occupancy coefficients for the species listed in the Western Pacific Regional Fishery Management Council’s Fishery Ecosystem Plans by analyzing the Pacific Island Fishery Science Center-Coral Reef Ecosystem Program Reef Fish Dataset. These detection and occupancy coefficients would then be applied to refine standing stock biomass estimates. In general, species with higher detection probabilities and/or lower occupancy rates tended to exhibit the greatest differences in the estimates of standing stock biomass calculated with and without accounting for detection and occupancy. The standing stock biomass of most reef fish species seem to be underestimated when detection and occupancy are not accounted for. However, the standing stock biomass of larger-bodied targeted species, such as jacks, snappers, and groupers, seem to be over-estimated relative to the estimates generated when accounting for occupancy and detection. While there are still issues to resolve regarding how well the current data collection methods meet the underlying assumptions of the detection and occupancy modeling approach, the inclusion of detection and occupancy coefficients seems likely to improve estimates of standing stock biomass of coral reef fish species.

Giant Trevally (Ulua Aukea) Caranx ignobilis is one of the most highly prized and frequently targeted nearshore species. However, there is very little information on its current status in Hawaiian waters. This study uses mark-recapture data collected as part of recreational angler tagging program conducted by the Hawaii Department of Land and Natural Resources-Division of Aquatic Resources during 2000-2012. Mark-recapture data were used to estimate von Bertalanffy growth curve parameters and survivorship. Growth curves generated from the mark recapture data suggested that Giant Trevally from the main Hawaiian Islands may be growing faster and reach a smaller maximum size than individuals in the Northwest Hawaiian Islands, but there are a number of issues rendering this conclusion uncertain. The survivorship of Giant Trevally was positively associated with age, in part due to ontogenetic habitat shifts that result in older fish moving to offshore habitats where they are less vulnerable to anglers. When compared to stock assessments performed using commercial landings data and fisheries-independent visual surveys, the mark-recapture data produced similar estimates for the average length of exploited fish, a metric highly negatively correlated to fishing mortality. These results emphasize the need for additional information on the biology of Giant Trevally in Hawaiian waters and suggest that the data collected from this recreational angler tagging program may be useful to generate reliable estimates of mortality for stock assessment purposes.

The Colorado River Basin in Texas has experienced major alterations to its hydrologic regime due to changing land and water use patterns. These anthropogenic influences on hydrologic variability have had major implications for riparian and aquatic ecosystems and the species dependent upon them. However, impacts are often assessed at a limited temporal and spatial scale, tending to focus on relatively short and discrete periods or portions of a river basin. It is not clear how basin-wide alterations occurring over decades affect species. Guadalupe Bass Micropterus treculii are endemic to central Texas and are typically associated with shallow runs and riffles in small streams. However, Guadalupe Bass are found throughout the Colorado River Basin, including the mainstem portion of the lower river downstream of the city of Austin where they support a popular fishery. Because Guadalupe Bass exist across a wide range of stream orders within the basin, it is unclear whether populations respond similarly to anthropogenic disturbances or to conservation and restoration activities. Therefore, our objectives were to: 1) assess the effects of urbanization and hydrology on the population structure and dynamics of Guadalupe Bass; 2) evaluate the effects of environmental gradients on ecomorphological variation in Guadalupe Bass populations across multiple spatial scales; and 3) describe the life history, habitat use, and behavior of the Guadalupe Bass population in the lower Colorado River and compare it to populations in more “typical” habitats. Results contribute to an understanding of the response of Guadalupe Bass to anthropogenic disturbances, including increased urbanization in central Texas and further assist in the conservation of the species. The ability of the population to not only persist, but flourish downstream of a heavily populated urban area presented a unique opportunity to investigate a native species response to anthropogenic disturbance. This research revealed differences in Guadalupe Bass habitat associations and movements, contrasts in age and growth, and morphological variation across a gradient of disturbance throughout the Colorado River Basin. Results of this work provide information on the potential effects of human population growth and increased water withdrawals on Guadalupe Bass populations. Additionally, this work adds to an understanding of the unique Guadalupe Bass population found in the lower Colorado River and how it differs from upstream tributary populations. Gathering additional population-level information facilitates conservation actions critical to preserving preferred habitat and promoting growth rates for Guadalupe Bass in streams of different sizes and flow conditions while highlighting interpopulation differences that may warrant consideration for stocking programs and other management strategies.

Burbot Lota lota is the sole freshwater representative of the cod-like fishes and supports subsistence, commercial, and recreational fisheries worldwide above approximately 40° N. It is a difficult species to manage effectively due to its preference for deep-water habitats and spawning activity under the ice in winter. Like other gadiform fishes, Burbot use acoustic signaling as part of their mating system, and while the acoustic repertoire of the species has been characterized under artificial conditions (i.e., net pen suspended under ice in a natural lake), there has been no work to determine whether the species is as vocal in natural spawning aggregations. Our objective was to assess the feasibility of collecting and using acoustic data to characterize the spawning activity and locations of Burbot under field conditions. We recorded audio and video of Burbot spawning aggregations through holes drilled into the ice at known spawning grounds at Moyie Lake in British Columbia, Canada. Acoustic recordings (call counts and audiograms) were analyzed using Raven Pro v 1. 4 software. Acoustic behavior was also related to video data to determine how acoustic activity correlated to any observed spawning behavior. In general, wild Burbot spawning in Moyie Lake did not vocalize as frequently as counterparts spawning under artificial conditions. Further, Burbot vocalizations were not recorded in conjunction with spawning activity. While it may be feasible to use passive acoustic monitoring to locate Burbot spawning grounds and identify periods of activity, it does not seem to hold much promise for locating and quantifying spawning activity in real time.

Guadalupe Bass has experienced declines in parts of its range due to habitat degradation and introgressive hybridization with Smallmouth Bass. Efforts to restore Guadalupe Bass have been ongoing in the Guadalupe River drainage for over twenty years, but have recently been expanded to the Llano River drainage. Conservation and restoration efforts in the South Llano River have included supplemental stocking of non-hybrid fingerlings as well as landscape-level restoration projects in riparian and upland areas to benefit the river system. To further this effort, we undertook a multifaceted approach to evaluate Guadalupe Bass population characteristics as well as habitat use patterns in order to refine conservation and restoration strategies. Catch per unit effort was highest in sites containing swift moving water and large woody debris while abundances were lower in pool habitats with bedrock substrates. Additionally, population estimates resulted in densities of Guadalupe Bass that were highest in the sub-reaches possessing greater amounts of riffle and run habitats. Evaluation of current introgression rates indicates that introgression has declined from 3.9% to 0.9% as stocking has occurred. Our results suggest that maintaining flows is critical to providing highly utilized habitat types and that supplemental stocking is an effective management tool for reducing introgression rates in Guadalupe Bass.

Understanding how environmental factors operating at different spatial scales within a watershed structure instream habitat is essential for accurately quantifying fish habitat associations and developing effective means for assessing stream conservation and restoration activities. In this study, we used a combination of side scan sonar surveys, imagery collected by an unmanned aerial vehicle, and instream surveys of fishes and physicochemical conditions to evaluate the effect of physicochemical and habitat variables at various spatial scales, e.g., micro-mesohabitat, mesohabitat, riffle-run-pool complex, stream reach, on fish assemblage habitat associations in the South Llano River, a spring-fed second order stream on the Edwards Plateau in central Texas. We found that the micro-mesohabitat scale and the riffle-run-pool complex scale had the greatest explanatory power. Many of the fishes endemic to the streams of the Edwards Plateau, such as Guadalupe Bass Micropterus treculii and Texas Logperch Percina carbonaria, exhibited associations with similar physicochemical and landscape variables. Our results suggest that conservation and restoration efforts targeting single species, such as the Guadalupe Bass Restoration Initiative, can benefit a suite of species. However, our results did not demonstrate incontrovertibly that a single species, such as Guadalupe bass, can serve as an indicator of the status of the stream fish assemblage as a whole. These findings will help provide data on the habitat use patterns of a fish assemblage in a relatively undisturbed Edwards Plateau stream and potentially help prioritize future restoration efforts for other streams in the region.