Research Team

Welcome to our research lab team page! Our group comprises of dedicated undergraduate & graduate students and postdocs who are committed to advancing scientific knowledge through cutting-edge research.

Our team works on several programs, including:

  • Synthetic biology in microalgae
  • Genome editing in tropical crops
  • Lipid metabolism in photosynthetic organisms and microbes
  • Symbiosis between photosynthetic organisms and microbes
  • Tropical natural resources for bioproducts
  • Bioreactor/biodevice development

 

With our expertise and passion for our work, we are pushing the boundaries of these fields to make breakthrough discoveries.

Join us!

Complete the form below to join us in our mission and discoveries through scientific innovation.

Zhi-Yan (Rock) Du

Department of Molecular Biosciences & Bioengineering

PhD, Associate Professor, Principle Investigator

Email: duz@hawaii.edu

Publications: Google Scholar | Research Gate

Education:
  • Ph.D., The University of Hong Kong, Hong Kong
  • M.S., Institute of Botany, Chinese Academy of Sciences, Beijing
  • B.S., Beijing Forest University, Beijing
 
Employment:
  • Associate Professor, Department of Molecular Biosciences & BioEngineering, University of Hawaii at Mānoa, Hawaii
  • Assistant Professor (tenure track), Department of Molecular Biosciences & BioEngineering, University of Hawaii at Mānoa, Hawaii
  • Assistant Professor (fixed-term), Department of Biochemistry & Molecular Biology, Michigan State University, Michigan
  • Research Associate, US Department of Energy-MSU Plant Research Laboratory, Michigan State University, Michigan
  • Research Assistant, Biochemistry & Molecular Biology, School of Biological Sciences, The University of Hong Kong, Hong Kong
 
Research:
  • Synthetic biology in microalgae for valuable bioproducts
  • Lipid metabolism in photosynthetic organisms including plants, microalgae, and cyanobacteria
  • Symbiosis among plants/microalgae, bacteria, and fungi
  • Genome editing of tropical crops for better agricultural traits
  • Bioreactor/biodevice development

 

Teaching:
  • MBBE/Biol 401 Molecular Biotechnology (3 cr) in spring each year
  • MBBE 401L Molecular Biotechnology Lab-Gene Editing by CRISPR/Cas (2 cr) in spring each year
  • MBBE 610 Molecular Biosciences Seminar in fall each year

Graduate Students

Juliette Protti

Ph.D. candidate (Sponsored by the Olakai Farm and UH Foundation), B.S. and M.S., University of Aberdeen, UK

Juliette works on marine agriculture

Yu Wang

Ph.D. candidate, B.S., Hunan Agricultural University, M.S., UH Manoa

Yu works on algae-fungi symbiosis and marine agriculture

Sally Do

M.S. candidate, B.S., UH Manoa

Sally works on photo bioreactor design and applications and synthetic biology in microalgae

Mu-Chien Lai

Ph.D. candidate, M.S., B.S.,
National Chung Hsing University

Mu-Chien works on algae-fungi symbiosis and marine agriculture

Pansa Cecchini

M.S. candidate, B.S.,
Hawaii Pacific University

Pansa works on coral bleaching and seaweed biodiversities

Rylie Leffingwell

Microbiology PhD program. B.S., Creighton University

Rylie works on fungal applications for waste management and synthetic lichen

Taren Bouwman

Ph.D. candidate, B.S., Pitzer College

Taren works on the BioCube, fungal isolates, algae-fungi symbiosis, sustainability, and algal synthetic biology

Rai Malayaj

M.S. candidate, B.S., Silliman University

Rai works on Algae & fungi applications

Rai works on algae & fungi stress tolerance and applications

Adam Phelps

M.S. candidate, B.S., UH Manoa; USDA-REEU awardee

Adam works on Algae & fungi applications

Zhiqing Fang

M.S. candidate (Co-PI with Dr. Zhiyue Wang), B.S., UH Manoa

Zhiqing works on Algae & fungi applications

Undergraduate Students

Current Students

Joanne Wong (UROP-ERC)

B.S., UH Manoa

Agricultural Waste on Fungal Growth

Enzo Yamagata (UROP-ERC)

B.S., UH Manoa

Agricultural Waste on Fungal Growth

Jason Shimoko (Honors)

B.S., UH Manoa

Agricultural Waste on Fungal Growth

Elijah Moniz (UROP-ERC & NHSEMP)

B.S., UH Manoa

Seaweed cultivation and breeding

Brandelyn Oshiro (UROP-ERC & UROP Project)

B.S., UH Manoa

Algae and fungi symbiosis

Daniel Chun (UROP)

B.S., UH Manoa

Seaweed cultivation and genetic engineering

Noah Birn (UROP-ERC)

B.S., UH Manoa

Sea plants and marine agriculture

Angelyn Plan

B.S., UH Manoa

Algae and fungi symbiosis

Kylie Hashiro

B.S., UH Manoa

Marine fungi and applications

Aliiza Haun

B.S., UH Manoa

Marine fungi cultivation and applications

Nanami Mehring

B.S., UH Manoa

Algae and fungi symbiosis

Mana Chun

B.S., UH Manoa

Alage synthetic biology

Sophie Lo

B.S., UH Manoa

Alage synthetic biology & symbiosis with fungi

Abbygail Jared

B.S., UH Manoa

Marine fungi and applications

Jenna Calvero

B.S., UH Manoa

Algae and fungi symbiosis

Kimberly Gabriel

B.S., UH Manoa

Microalgae harvesting and symbiosis

Catherine Mattson

B.S., UH Manoa

Algae and fungi symbiosis & bioenergy

Grace Gehrich

B.S., UH Manoa

Algae and fungi symbiosis & bioenergy

Lyndee Mersch

B.S., UH Manoa

Algae and fungi symbiosis & bioenergy

High-School Students

Current Students

Deborah (Debbie) Park

Iolani School

Synthetic biology in algae for bioproducts; Debbie won the first place in the plant science category of the Hawaii State Science and Engineering Fair (HSEF), and then third place in Plant Science at the International Science and Engineering Fair in Ohio (ISEF), 2025

Debbie & Pansa on the UHM News

Dava Watson

University Laboratory School

Lipid-Based Biofuel Potential of Sea Cucumber Gut Microbiomes Across Oʻahu

Former Lab Members

Graduate Students

Ty Shitanaka

B.S., M.S. and Ph.D., UH Manoa

Ty worked on synthetic biology in microalgae and symbiosis research between microbes

Lauren Higa

M.S. Graduate

Worked on CRISPR engineering in maize and synthetic biology applications.

Julia Yuson

M.S. Graduate

Worked on algae & fungi symbiosis.

Max Blank

Ph.D. candidate, B.S., University of Cologne & Max Planck Institute; M.S., Heinrich Heine University Duesseldorf & Max Planck Institute

Max worked on the maize engineering

Kanak Pal

M.S. candidate, B.S., UH Manoa

Kanak was the engineer in the lab

Michaela Durďáková

Visiting Ph.D.
Mendel University in Brno

Worked on algal symbiosis & bioremediation and international research collaboration projects.

Rumesh Senthilnathan

M.S. Graduate

Worked on algal cultivation systems and sustainability-focused research.

Shaina Young

M.S. candidate, B.S., UH Manoa

Shaina worked on microalgae harvesting

Undergraduate Students

UROP Awardees

Caitlyn Lee (& Lauren Higa)

B.S., UH Manoa

Investigating biodiversity of algae-associated fungi and screening productive strains for co-production of valuable bioproducts

Arel Jane Ragasa

B.S., UH Manoa

Investigating biodiversity of algae-associated fungi and screening productive strains for co-production of valuable bioproducts

Yejean Chung (& Shaina Young)

B.S., UH Manoa

Using sustainable fungal filters to harvest microalgae for valuable bioproducts

Ju-Ling Chen (& Sally Do)

B.S., UH Manoa

Designing Cost-Efficient and Environmental Bioreactors for Algal Research

Thomas Nitta

B.S., UH Manoa

Non-transgenic mutagenesis breeding of zooxanthellae to improve heat and pH resilience and tolerance of the coral microalgae

Edoardo Sena

B.S., UH Manoa

Non-transgenic mutagenesis breeding of zooxanthellae to improve heat and pH resilience and tolerance of the coral microalgae

Keilah Wilkes (UROP & USDA-REEU)

B.S., UH Manoa

Optimizing Maize Protoplast Transfection using Electroporation

Jenna Matsuyama

B.S., UH Manoa

Optimizing Maize Protoplast Transfection using Electroporation

Lana Mitchell

B.S., UH Manoa

The endurance of algae-fungi symbionts under various environmental stressors

Ashlyn Godbehere

B.S., UH Manoa

Understanding Marine Fungal-Algal Relationships: Screening Productive Marine Fungal Strains for Potential Co-Production of Valuable Bioproducts

Crystal Canales

B.S., UH Manoa

Developing tropical resources for biomed uses

NHSEMP, Honors, and NSF-REU Students

Haylee Fujioka (Honors)

B.S., UH Manoa

Algal biomass and applications

Ashlyn Uehara (NHSEMP)

B.S., UH Manoa

Maize CRISPR engineering

Cade Kane (NHSEMP)

B.S., UH Manoa

Photobioreactor & algal biofiltration

Abigail Rohy (NSF Biodiversity REU)

B.S., UH Manoa

Alga-fungus interaction

Kyla Tuazon (NSF Biodiversity REU)

B.S., UH Manoa

Alga-fungus interaction

Direct Research Students

Alexander Walker

B.S., UH Manoa

Alexander works on bioengineering projects

Henry Huynh

B.S., UH Manoa

Henry works on alternative splicing in microlagae and cyanobacteria

Robianne Tucker

B.S., UH Manoa

Robianne works on microalgae isolation

Sean Standiford

B.S., UH Manoa

Algal biomass

Lisa Lowe (& Kanak Pal)

B.S., UH Manoa

Algal biofiltration

Alicia Ainsley Velasco

B.S., UH Manoa

Alternative splicing in algae

Ian Martin

B.S., UH Manoa

Fungal materials

David Paul Advincula

B.S., UH Manoa

Fungal materials

Laura Lindle

B.S., UH Manoa

Biochem analysis of invasive macroalgae

Olivia Smith

B.S., UH Manoa

Biochem analysis of invasive macroalgae

Tea Stephens

B.S., UH Manoa

Stress tolerance of alga-fungus consortia

Annie Stevens

B.S., UH Manoa

Stress tolerance of alga-fungus consortia

Anna Jee

B.S., UH Manoa

Algal nutrition

Brenna Burk

B.S., UH Manoa

Stress tolerance of alga-fungus consortia

Logan North

B.S., UH Manoa

Biodiversity and biochem analysis of microalgae

Dorothy Montgomery

B.S., UH Manoa

Biodiversity and biochem analysis of microalgae

Ethan Butay

B.S., UH Manoa

Biodiversity and biochem analysis of microalgae

Adrianna Dupriest

B.S., UH Manoa

Alga-fungus interaction

Fabiola Suciu Zamora

B.S., UH Manoa

Alga-fungus interaction

Alyssa Poynter

B.S., UH Manoa

Alga-fungus interaction

Skye Inn

B.S., UH Manoa

Zooxanthellae breeding

Taylor Kennedy

B.S., UH Manoa

Tropical crop microbiome

Barbara Grigsby

B.S., UH Manoa

Tropical crop microbiome

Emerald Chea

B.S., UH Manoa

Biodiversity and biochem analysis of microalgae

Kelly Chang

B.S., UH Manoa

Photobioreactor & algal biofiltration

Amy Denis

B.S., UH Manoa

Fungal materials and cultivation with agricultural waste

Grace Myers

B.S., UH Manoa

Fungal materials and cultivation with agricultural waste

Laura Green

B.S., UH Manoa

Algal nutrition

Mark Pusung

B.S., UH Manoa

Algal nutrition & algal nutrient consumption

Gabriel Bradshaw

B.S., UH Manoa

Fungal cultivation

Lindsey Jaeger

B.S., UH Manoa

Algae and fungi symbiosis

Raon Traynor

B.S., UH Manoa

Seaweed cultivation and breeding

Elijah Stotijn

B.S., UH Manoa

Seaweed cultivation and breeding

Ryan Amato

B.S., UH Manoa

Fungal cultivation

Delara Ditterich

B.S., UH Manoa

Algae and fungi symbiosis

Emma Warhank

B.S., UH Manoa

Sea crop applications

Jimmy Wayne

B.S., UH Manoa

Seaweed cultivation and breeding

Alea Malen Eugenio

B.S., UH Manoa

Algae and fungi symbiosis

Manaka Sai

B.S., UH Manoa

Microalgae harvesting and symbiosis

Jenny Andrada

B.S., UH Manoa

Algae and fungi symbiosis

High-School Students

Leyna Ko

Kalani High School

Invasive seaweed analysis and control

Hayeon Kim

Wells International School

Fungal biodiversity and applications

Avalon Tosaki

Iolani School

Fungal biodiversity and applications

Punyisa Sawakewongpra

Wells International School

Algae and fungi symbiosis