Publications

Journals

  1. Comparison of normalization methods for differential gene expression analysis in RNA-Seq experiments: A matter of relative size of studied transcriptomes, Elie Maza, Pierre Frasse, Pavel Senin, Mondher Bouzayen, Mohamed Zouine, Communicative & integrative biology, 6, 6, 2013.
  2. Assembling the marine metagenome, one cell at a time, Tanja Woyke, Gary Xie, Alex Copeland, José M González, Cliff Han, Hajnalka Kiss, Jimmy H Saw, Pavel Senin, Chi Yang, Sourav Chatterji, Jan-Fang Cheng, Jonathan A Eisen, Michael E Sieracki, Ramunas Stepanauskas, PLoS One, 4, 4, 2009.
  3. Complete genome sequence of the extremely acidophilic methanotroph isolate V 4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia, Shaobin Hou, Kira S Makarova, Jimmy HW Saw, Pavel Senin, Benjamin V Ly, Zhemin Zhou, Yan Ren, Jianmei Wang, Michael Y Galperin, Marina V Omelchenko, Yuri I Wolf, Natalya Yutin, Eugene V Koonin, Matthew B Stott, Bruce W Mountain, Michelle A Crowe, Angela V Smirnova, Peter F Dunfield, Lu Feng, Lei Wang, Maqsudul Alam, Biology Direct, 3, 26, 1-28, 2008.
  4. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus), Ray Ming, Shaobin Hou, Yun Feng, Qingyi Yu, Alexandre Dionne-Laporte, Jimmy H Saw, Pavel Senin, Wei Wang, Benjamin V Ly, Kanako LT Lewis, Steven L Salzberg, Lu Feng, Meghan R Jones, Rachel L Skelton, Jan E Murray, Cuixia Chen, Wubin Qian, Junguo Shen, Peng Du, Moriah Eustice, Eric Tong, Haibao Tang, Eric Lyons ... Nature, 452, 7190, 991-996, 2008.
  5. Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia, Peter F Dunfield, Anton Yuryev, Pavel Senin, Angela V Smirnova, Matthew B Stott, Shaobin Hou, Binh Ly, Jimmy H Saw, Zhemin Zhou, Yan Ren, Jianmei Wang, Bruce W Mountain, Michelle A Crowe, Tina M Weatherby, Paul LE Bodelier, Werner Liesack, Lu Feng, Lei Wang, Maqsudul Alam Nature, 450, 7171, 879-882, 2007.

Conferences

  1. GrammarViz 2.0: a tool for grammar-based pattern discovery in time series. Pavel Senin, Jessica Lin , Xing Wang, Tim Oates, Sunil Gandhi, Arnold P. Boedihardjo, Crystal Chen, Susan Frankenstein, and Manfred Lerner. The European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases, Demo track, ECML/PKDD, 2014
  2. MBPD: Motif-Based Period Detection, Rasaq Otunba, Jessica Lin, Pavel Senin, In Proc. of the 1st International Workshop on Pattern Mining and Application of Big Data (BigPMA), 2014
  3. SAX-VSM: Interpretable Time Series Classification Using SAX and Vector Space Model, Pavel Senin and Sergey Malinchik, IEEE International Conference on Data Mining, 2013
  4. Recognizing recurrent development behaviors corresponding to Android OS release life-cycle, Pavel Senin, International Conference on Software Engineering Research and Practice, 2012
  5. Software Trajectory Analysis: An empirically based method for automated software process discovery, Pavel Senin, Fifth International Doctoral Symposium on Empirical Software Engineering, 2010

Techreports

  1. Experiences with hackystat as a service-oriented architecture, Philip M Johnson, Shaoxuan Zhang, Pavel Senin Department of Information and Computer Sciences, University of Hawaii, USA, 2009
  2. Dissertation proposal, Software Trajectory Analysis: An empirically based method for automated software process discovery, Pavel Senin Department of Information and Computer Sciences, University of Hawaii, USA, 2009
  3. Literature review on time series indexing, Pavel Senin Department of Information and Computer Sciences, University of Hawaii, USA, 2009
  4. Dynamic time warping algorithm review, Pavel Senin Department of Information and Computer Sciences, University of Hawaii, USA, 2008
  5. MCMC simulation of interstellar grain chemistry, Pavel Senin MS Capstone project TR. Department of Information and Computer Sciences, University of Hawaii, USA, 2007
  6. Grayscale image segmentation using reversible jump MCMC, Pavel Senin Department of Information and Computer Sciences, University of Hawaii, USA, 2007
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