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Nhu collecting Suillus lakei in Colorado. Nhu H. Nguyen
Assistant Professor/Researcher
Principle Investigator
Office: 221 Sherman Laboratory
Office Phone: 808-956-6593
Lab Phone: 808-956-2634
Email: nhu.nguyen@hawaii.edu

Research Interests


I'm broadly interested in diversity of organisms and how they interact with each other and their environments, and the functional outcomes of these interactions across time and space. My approach is grounded organismal biology, using experiments and the methods the best available method to answer questions of interest.

Affiliations

Evolutionary Ecology & Conservation Biology (EECB) faculty

Courses

TPSS/BIOL 480 - Life in the Soil Environment
MICR 485 - Microbes and their Environment
TPSS 604 - Advanced Soil Microbiology
TPSS 711 - Special Topics: Microbiome: From soils to sequences

Publications

2018

Lofgren L, Nguyen NH, Kennedy P. Ectomycorrhizal host specificity in a changing world: can legacy effects explain anomalous current associations? New Phytologist, Published online. Paper

Nguyen NH. 2018. Longevity of light and dark-colored basidiospores from saprotrophic mushroom-forming fungi. Mycologia 110:131-135. DOI: 10.1111/nph.15008. Paper

Hynson NA, Frank KL, Alegado RA, Amend AS, Arif M, Bennett GM, Jani AJ, Medeiros MCI, Mileyko Y, Nelson CE, Nguyen NH, Nigro OD, Prisic S, Shin S, Takagi D, Wilson ST, Yew JY. 2018. Synergy among microbiota and their hosts: Leveraging the Hawaiian archipelago and local collaborative networks to address pressing questions in microbiome research. mSystems. 3:e00159-1, doi:10.1128/mSystems.00159-17. Paper

Kennedy P, Louis Mielke, Nguyen NH. 2018. Ecological responses to forest age, habitat, and host vary by mycorrhizal type in boreal peatlands. Mycorrhiza 28:315-328. DOI: 10.1007/s00572-018-0821-4. Paper


2017

Branco S, Bi K, Liao H-L, Gladieux P, Badouin H, Ellison CE, Nguyen NH, Vilgalys R, Peay KG, Taylor JW, Bruns TD. 2017. Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes. Molecular Ecology. Molecular Ecology 26: 2063–2076. DOI: 10.1111/mec.13892. Paper

Fernandez C, Nguyen NH, Stefanski A, Han Y, Hobbie S, Montgomery R, Reich PB, Kennedy P. 2017. Reduced boreal tree host photosynthetic performance in response to warming selectively alters ectomycorrhizal fungal community structure. Global Change Biology 23:1598–1609. DOI: 10.1111/gcb.13510. Paper


2016

Ferro ML, Nguyen NH. 2016. Survey of twig-inhabiting Coleoptera in Louisiana, USA. The Coleopterists Bulletin 70: 551–558. Paper

Nguyen NH, Williams L, Stefanski A, Vincent J, Cavender-Bares J, Messier C, Paquette A, Gravel, D, Reich P, Kennedy PG. 2016. Ectomycorrhizal and saprotrophic fungal diversity are linked to different tree community attributes in a field-based tree experiment. Molecular Ecology 25:4032–4046. doi: 10.1111/mec.13719. Paper

Nguyen NH, Song Z, Bates ST, Branco S, Tedersoo L, Menke J, Schilling J, Kennedy P. 2016. FUNGuild: an open annotation tool for parsing high-throughput fungal community datasets by ecological guilds. Fungal Ecology 20:241–248. doi:10.1016/j.funeco.2015.06.006. Paper

Marshall DL, Dickson JS, Nguyen NH. 2016. Ensuring food safety in insect based foods: Mitigating microbiological and other foodborne hazards. In: A.T. Dossey, J.A. Morales-Ramos, and M.G. Rojas, eds. Insects as Sustainable Food Ingredients: Production, Processing and Food Applications. Academic Press. p. 385. doi:10.1016/B978-0-12-802856-8.00008-9

Rineau F, Stas J, Nguyen NH, Kuyper TW, Carleer R, Vangronsveld J, Colpaert J V, Kennedy PG. 2016. Ectomycorrhizal fungal protein degradation ability predicted by soil organic nitrogen availability. Applied Environmental Microbiology 82:1391–1400, doi:10.1128/AEM.03191-15. Paper


2015

Song Z, Schlatter D, Kennedy P, Kinkel, Kistler HC, Nguyen NH; Bates S. 2015. Effort Versus Reward: Preparing samples for fungal community characterization in high-throughput sequencing surveys of soils. PLOS ONE 10: e0127234. DOI: 10.1371/journal.pone.0127234. Paper

Nguyen NH, Bruns TD. 2015. The microbiome of Pinus muricata ectomycorrhizae: community assemblages, fungal species effects, and Burkholderia as important bacteria in multi-partnered symbioses. Microbial Ecology 69:914-921. DOI: 10.1007/s00248-015-0574-y. Paper

Nguyen NH, Smith D, Peay KP, Kennedy P. 2015. Parsing ecological signal from noise in next generation amplicon sequencing. New Phytologist 205:1389–1393. DOI: 10.1111/nph.12923. http://onlinelibrary.wiley.com/doi/10.1111/nph.12923/full Paper

Siegel N, Nguyen NH, Vellinga EC. 2015. Pholiota olivaceophylla, a forgotten name for a common snowbank fungus, and notes on Pholiota nubigena. Mycotaxon 130:517–532, doi:10.5248/130.517. Paper


2014

Arora D, Nguyen NH 2014. A new species of Russula, subgenus Compactae from California. North American Fungi 9:1-7. 10.2509/naf2014.009.008. Paper

Kennedy P, Nguyen NH, Cohen H, Peay KG. 2014. Missing checkerboards: an absence of competitive signal in Alnus-associated ectomycorrhizal fungal communities. PeerJ 2:e686 https://dx.doi.org/10.7717/peerj.686. Paper

Justo A, Malysheva E, Bulyonkova T, Vellinga EC, Cobian G, Nguyen NH, Minnis AM, Hibbett DS. 2014. Molecular phylogeny and phylogeography of Holarctic species of Pluteus section Pluteus (Agaricales: Pluteaceae), with description of twelve new species. Phytotaxa 180:1-85. DOI: 10.11646/phytotaxa.180.1.1 Paper

Ceja-Navarro JA, Nguyen NH*, Karaoz U, Gross SR, Herman DJ, Andersen GL, Bruns TD, Pett-Ridge J, Blackwell M, Brodie EL. 2014. Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus. The ISME Journal 8:6–18. DOI:10.1038/ismej.2013.13. *1st and 2nd author contributed equally to this work. Paper


2013

Ferro ML, Nguyen NH, Tishechkin A, Park J-S, Bayless V, Carlton CE. 2013. Coleoptera collected from rotting fishhook barrel cacti (Ferocactus wislizeni (Engelm.) Britton and Rose), with a review of neartic Coleoptera associated with succulent necrosis. The Coleopterists Bulletin 67:419–443. Paper

Kõljalg U, Nilsson RH, Abarenkov K., et al. 2013 Towards a unified paradigm for sequence-based identification of Fungi. Molecular Ecology 22: 5271–5277. DOI: 10.1111/mec.12481 Paper

Nguyen NH, Landeros F, Garibay-Orijel Roberto, Hansen Karen, Vellinga EC. 2013. The Helvella lacunosa species complex in western North America: cryptic species, misapplied names and parasites. Mycologia 105:1275-1286. DOI: 10.3852/12–391 Paper


2012

Nguyen NH, Kerekes JF, Vellinga EC, Bruns TD. 2012. Synonymy of Suillus imitatus, the imitator of two species within the S. caerulescens/ponderosus complex. Mycotaxon 122:389–398. DOI: 10.5248/122.389. Paper

Nguyen NH, Hynson NA, Bruns TD. 2012. Stayin’ Alive: survival of mycorrhizal fungal propagules from 6-yr-old forest soil. Fungal Ecology 5:741–746; DOI: 10.1016/j.funeco.2012.05.006. Paper

Peay GP, Schubert MG, Nguyen NH, Bruns TD. 2012. Measuring ectomycorrhizal fungal dispersal: macroecological patterns driven by microscopic propagules. Molecular Ecology 21: 4122-4136; DOI: 10.1111/j.1365-294X.2012.05666.x. Paper


2011

Nguyen NH, Suh S-O & Blackwell M. 2011. Spathaspora Nguyen, Suh & Blackwell. In: The Yeasts, a taxonomic study, 5th Edition. Eds. Kurtzman, C.P., J. Fell, and T. Boekhout. Elsevier, Amsterdam. Paper


2009

Bruns TD, Peay KG, Boynton PJ, Grubisha LC, Hynson NA, Nguyen NH, Rosenstock NP. 2009. Inoculum potential of Rhizopogon spores increases with time over the first four years of a 99-year spore burial experiment. New Phytologist 181:463–470. Paper


2008

M. I. Bidartondo et al. 2008. Preserving Accuracy in GenBank. Science 319:1616. Paper

Nguyen NH, Driscoll HE, & Specht CD. 2008. A molecular phylogeny of the wild onions (Allium; Alliaceae) with a focus on the Western North American center of diversity. Molecular Phylogenetics and Evolution 47:1157–1172. Paper

Suh S-O, Nguyen NH & Blackwell M. 2008. Yeasts isolated from plant-associated beetles and other insects: seven novel Candida species near Candida albicans. FEMS Yeast Research 8:88–102. Paper


2007

Nguyen NH, Suh S-O & Blackwell M. 2007. Five novel yeast species associated with Neuroptera and other insects. Mycologia 99:842–858. Paper


2006

Suh S-O, Nguyen NH & Blackwell M. 2006. A yeast clade near Candida kruisii uncovered: nine novel Candida species associated with basidioma-feeding beetles. Mycological Research 110:1379–1394. Paper

Nguyen NH, Suh S-O, Marshall C & Blackwell M. 2006. Morphological and ecological similarities: wood-boring beetles associated with novel xylose-fermenting yeasts, Spathaspora passalidarum gen. nov., sp. nov. and Candida jeffriesii sp. nov. Mycological Research 110:1232–1241. Paper

Nguyen NH, Suh SO, Erbil CK & Blackwell M. 2006. Metschnikowia noctiluminum sp. nov., Metschnikowia corniflorae sp. nov., and Candida chrysomelidae sp. nov., isolated from green lacewings, and beetles. Mycological Research 110: 346-356. Paper

Nardi JB, Bee CM, Miller LA, Nguyen NH, Suh S-O & Blackwell M. 2006. Communities of microbes that inhabit the changing hind gut landscape of a subsocial beetle. Arthropod Structure and Development 35: 57-68. Paper


2005

Suh S-O, Nguyen NH & Blackwell M. 2005. Nine new Candida species near Candida membranifaciens isolated from insects. Mycological Research 109: 261-265. Paper


2004

Suh S-O, White MM, Nguyen NH & Blackwell M. 2004. The identification of Enteroramus dimorphus: a xylose-fermenting yeast attached to the gut of beetles. Mycologia 96:756-760. Paper